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SRX4714812: GSM3395204: WT; Danio rerio; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 27.7M spots, 8.3G bases, 3.1Gb downloads

Submitted by: NCBI (GEO)
Study: Next Generation Sequencing analysis atg5 gene expression in zebrafish model
show Abstracthide Abstract
Purpose: study of function of ATG5 protein on zebrafish larvae development Methods: Using morpholino oligos for atg5 gene knock down and overexpression, injected into one- to four-cell-stage embryos,extracted total RNA, then sending to RNA sequencing. Results: we compared to Wildtype, 5MO and atg5 mRNA groups, we analyza autophagy related gene mRNA expression, there are obvious different. Conclusion: our study showed the function of autophagy related gene 5 on zebrafish larvae, it has an important significant for understanding the affection of autophagy on embryo development Overall design: Using morpholino oligos for atg5 gene knock down and overexpression, injected into one- to four-cell-stage embryos,extracted total RNA, then sending to RNA sequencing.
Sample: WT
SAMN10090356 • SRS3800521 • All experiments • All runs
Organism: Danio rerio
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: A total amount of 1.5μ g RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® UltraTM RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer's recommendations and index codes were added to attribute sequences to each sample. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM3395204
Links:
Runs: 1 run, 27.7M spots, 8.3G bases, 3.1Gb
Run# of Spots# of BasesSizePublished
SRR787595327,736,4248.3G3.1Gb2019-04-30

ID:
6382631

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