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SRX4582025: GSM3348211: T32 TFH; Mus musculus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 34M spots, 5.1G bases, 2.2Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptome analysis of antigen-specific T follicular helper (Tfh) cells and non-Tfh cells
show Abstracthide Abstract
To identify transcription factors critically involved in the Tfh cell transcriptional network, antigen-specific Tfh and non-Tfh cells from a day 8 immune response were analyzed by RNA-seq. Overall design: Ovalbumin-specific T cells from OT-II TCR-transgenic mice were transferred into C57BL/6 recipients, which were immunized subcutaneously with nitrophenol coupled to ovalbumin. Eight days after immunization, transgenic T cells from pooled inguinal lymph nodes were sorted for a CD44hi CXCR5+ PD-1+ Tfh and CD44hi CXCR5- PD-1- non-Tfh cell phenotype for analysis by RNA-seq.
Sample: T32 TFH
SAMN09867722 • SRS3696349 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was purified with the Roche High Pure RNA Isolation Kit from FACS-sorted antigen-specific (Thy-1.1+) CD44hi CXCR5+ PD-1+ Tfh and CXCR5- PD-1- non-Tfh cells isolated from inguinal lymph nodes. RNA quality was determined on a Bioanalyzer using the RNA 6000 Pico Kit (Agilent). The library was prepared using the TruSeq® Stranded Total RNA Sample Preparation Kit (Illumina) according to the manufacturer's instructions. Paired-end sequencing with 2x75 nucleotides was performed on a NextSeq500 (Illumina).
Experiment attributes:
GEO Accession: GSM3348211
Links:
Runs: 4 runs, 34M spots, 5.1G bases, 2.2Gb
Run# of Spots# of BasesSizePublished
SRR77255388,440,6431.3G550.3Mb2019-02-13
SRR77255398,453,8441.3G549.3Mb2019-02-13
SRR77255408,584,0251.3G561.8Mb2019-02-13
SRR77255418,524,4781.3G555.8Mb2019-02-13

ID:
6195517

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