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SRX4397478: GSM3273382: uvr8-2-UV-A-B-R1; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 18.7M spots, 1.4G bases, 563.1Mb downloads

Submitted by: NCBI (GEO)
Study: Transcriptome analysis of Arabidopsis thaliana photoreceptor mutants impaired in UV and blue light signaling
show Abstracthide Abstract
Plants use sunlight as a source of energy for photosynthesis but also as an important environmental cue to regulate growth, development and light acclimation. Wavelengths in the UV-B (280-315 nm) and UV-A/blue (315-500 nm) regions of the spectrum are perceived by UV RESISTANCE LOCUS 8 (UVR8) and cryptochromes (CRY1 and CRY2), respectively. Despite recent advances in our understanding of how these photoreceptors promote photomorphogenesis, very little is known about the molecular mechanisms regulated by UVR8 and CRYs in sunlight exposed plants. Here, a factorial experiment was designed to assess the roles of UVR8 and CRYs in regulating transcriptome wide changes, hormone accumulation, and growth competence of Arabidopsis thaliana plants exposed to solar UV-B, UV-A, and blue radiation. Overall design: Transcriptome profiling of solar UV and blue responses in Arabidopsis wild-type Ler and photoreceptor mutants (uvr8-2 and cry1cry2) to assess the roles of UVR8 and cryptochromes in the regulation of gene expression in sunlight.
Sample: uvr8-2-UV-A-B-R1
SAMN09668292 • SRS3552532 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Each biological sample collected consisted of five pooled rosettes frozen in liquid nitrogen and stored at –80°C. The rosette leaves from each pooled sample were ground with mortar and pestle in liquid nitrogen. An aliquote from the powdered sample was separated for gene expression (RNA-seq and qPCR). RNA was extracted with with GeneJet Plant RNA purification Mini Kit (Thermo Scientific). RNA quality and concentration were measured using Agilent 2100 Bioanalyzer and NanoDrop. RNA-seq library preparation and sequencing was performed at the Institute of Biotechnology, University of Helsinki using two pooled biological replicates. Each replicate consisted of RNA from two different experimental blocks in the field. Libraries were prepared using 1µg total RNA following instructions from Illumina TruSeq Stranded mRNA Library Prep Kit.
Experiment attributes:
GEO Accession: GSM3273382
Links:
Runs: 1 run, 18.7M spots, 1.4G bases, 563.1Mb
Run# of Spots# of BasesSizePublished
SRR752915518,716,3361.4G563.1Mb2018-10-31

ID:
5974653

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