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SRX4394771: GSM3272795: mRNA_HC_NDN_1; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 55.6M spots, 2.8G bases, 968.2Mb downloads

Submitted by: NCBI (GEO)
Study: Dysregulated neutrophil responses and neutrophil extracellular trap formation and degradation in PAPA syndrome
show Abstracthide Abstract
Pyogenic arthritis, pyoderma gangrenosum and acne (PAPA) syndrome is characterized by flares of sterile arthritis with neutrophil infiltrate and the overproduction of Interleukin (IL)-1ß. The purpose of this study was to elucidate the potential role of neutrophil subsets and neutrophil extracellular traps (NETs) in the pathogenesis of PAPA. The transcriptome of PAPA normal-dense neutrophils, autologous LDGs, and healthy control normal-dense neutrophils was characterized using RNASeq. The transcriptome of a PAPA skin biopsy and a healthy control skin sample was elucidated using RNASeq. Overall design: This dataset includes a total of 5 individual samples. This study sought to characterize PAPA normal-dense neutrophils, autologous LDGs, and healthy control normal-dense neutrophils and determine their transcriptomic profiles. We also wanted to characterize the transcriptomic profile of PAPA skin compared to a healthy control skin.
Sample: mRNA_HC_NDN_1
SAMN09665979 • SRS3550022 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Normal density neutrophils were isolated by dextran sedimentation from control and PAPA patients. LDGs were isolated by negative selection from the PBMC fraction. Cells were resuspended in TriPure and RNA was isolated using the Zymo RNA Miniprep Kit. cDNA libraries were prepared using the TruSeq® Stranded mRNA NeoPrep™ Kit (Illumina) RNA seq data were generated on Illumina HiSeq 3000 instrument according to the manufacturer's instructions
Experiment attributes:
GEO Accession: GSM3272795
Links:
Runs: 1 run, 55.6M spots, 2.8G bases, 968.2Mb
Run# of Spots# of BasesSizePublished
SRR752622655,632,4542.8G968.2Mb2018-10-23

ID:
5971946

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