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SRX4200392: GSM3187911: HBMet Rep 2; Homo sapiens; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 95.1M spots, 7.2G bases, 3.2Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic hallmarks of tumor plasticity and stromal interactions in brain metastasis [BrainMet_SQ_2D]
show Abstracthide Abstract
We find that malignant LUAD tumor cells grown in the brain microenvironment display significantly altered transcriptomic profiles when compared to tumor cells grown in monolayer or subcutaneously. Additionally, we characterize the reciprocal neuroinflammatory response of the surrounding brain stroma to metastatic LUAD. This dataset can be utilized to explore the mechanisms of LUAD cell plasticity as well as the co-adaptation of the brain microenvironment to metastatic disease. Overall design: Examination of the transcriptomic profiles of LUAD cells grown in different microenvironments (i.e., Brain, subcutaneous, monolayer culture) and the corresponding gene expression alterations of the stroma in the tumor-bearing brain.
Sample: HBMet Rep 2
SAMN09402942 • SRS3410626 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted using the RNeasy Lipid Tissue mini kit (QIAGEN). RNA libraries were prepared for sequencing using standard Illumina protocols.
Experiment attributes:
GEO Accession: GSM3187911
Links:
Runs: 1 run, 95.1M spots, 7.2G bases, 3.2Gb
Run# of Spots# of BasesSizePublished
SRR729785895,099,1447.2G3.2Gb2019-04-09

ID:
5687336

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