GSM3178841: PBS_3_62; Rattus norvegicus; RNA-Seq - SRA

SRX4180240: GSM3178841: PBS_3_62; Rattus norvegicus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 24.5M spots, 1.8G bases, 656.3Mb downloads

Submitted by: NCBI (GEO)

Study: Transcriptome profiles of liver from cirrhotic rat treated with nizatidine

PRJNA475129 • SRP149999 • All experiments • All runs

show Abstracthide Abstract

Male rats received repeated low-dose diethylnitrosamine (DEN) to induce liver cirrhosis, and were treated with nizatidine to examine change of liver transcriptome and its association with liver cancer chemopreventive effect of nizatidine. Overall design: Male rats received repeated low-dose diethylnitrosamine (DEN) to induce liver cirrhosis, and were treated with nizatidine to examine change of liver transcriptome and its association with liver cancer chemopreventive effect of nizatidine.

Sample: PBS_3_62

SAMN09379991 • SRS3391783 • All experiments • All runs

Organism: Rattus norvegicus

Library:

Instrument: NextSeq 500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: RNA was isolated using the RNeasy Mini kit (Qiagen), and cDNA was synthesized using the SuperScript III First-Strand Synthesis SuperMix Kit (Invitrogen) following manufacturer's instructions. Poly A-selected sequencing library preparation using TruSeq RNA Sample Prep Kit ver.2 (Illumina) following manufacturer's protocol.

Experiment attributes:

GEO Accession: GSM3178841

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 24.5M spots, 1.8G bases, 656.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR7276641	24,463,469	1.8G	656.3Mb	2021-06-28

ID:: 5667017

SRA

Sequence Read Archive

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