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SRX3929687: GSM3096121: Acomys_Day-7_rep2; Acomys cahirinus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 37.3M spots, 11.2G bases, 4.7Gb downloads

Submitted by: NCBI (GEO)
Study: Comparative Transcriptomic Analysis of Dermal Wound Healing Reveals De Novo Skeletal Muscle Regeneration in Acomys cahirinus
show Abstracthide Abstract
This project is a comprehensive analysis of gene expression following full-thickness excisional dermal wounds in the African spiny mouse and the laboratory mouse. Overall design: 8mm excisional wounds were made on the dorsal skin. Wounds were harvested on day 7 and 14 after wounding. Normal, unwounded (day 0) skin was used as a control. N=4 for each time point for each species. 2x150 bp paired-end reads. DSN library was equal amounts of all Acomys samples, pooled, and normalized using duplex-specific nuclease. The 'Mus_Day-0_rep3' sample was removed from downstream analysis due to poor QC results, and is not included here.
Sample: Acomys_Day-7_rep2
SAMN08922523 • SRS3162857 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted following Trizol protocol and cleaned using Qiagen's RNeasy mini kit. Libraries were prepared using Illumina's TruSeq RNA Sample Preparation kits. 2x150bp paired-end.
Experiment attributes:
GEO Accession: GSM3096121
Links:
Runs: 1 run, 37.3M spots, 11.2G bases, 4.7Gb
Run# of Spots# of BasesSizePublished
SRR699495537,313,40211.2G4.7Gb2019-04-25

ID:
5388477

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