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SRX3846716: GSM3067660: untreated control 5 (blood); Mus musculus; OTHER
1 ILLUMINA (NextSeq 500) run: 942,826 spots, 282.8M bases, 129.1Mb downloads

Submitted by: NCBI (GEO)
Study: Extrinsic C5a Activation Regulates Squamous Carcinogenesis and Limits Clonal T Cell Responses to Chemotherapy (Blood)
show Abstracthide Abstract
In the K14-HPV16 transgenic mouse model of squamous carcinogenesis, activation of C5a receptor (C5aR1) in early neoplastic tissues fosters protumorigenic properties of C5aR1+ mast cells and macrophages, and in turn, suppression of CD8+ T cell cytotoxicity. Therapeutic inhibition of C5a receptor (C5aR1) with a peptide antagonist improved efficacy to paclitaxel chemotherapy associated with CXCR3-dependent CD8+ T cell activation. To investigate the effects of combination therapy on the T cell repertoire, we performed deep sequencing of the complementarity-determining region (CDR) 3 of the T cell receptor (TCR)b chain in matched tumor lysates and peripheral blood mononuclear cells (PBMCs). Intratumoral TCRß clonotypes were hyperexpanded and increasingly detected in matched peripherally-expanded T cell populations, thereby implicating antigen-dependent peripheral priming in response to systemic C5aR1 inhibition. Overall design: Deep sequencing of the complementarity-determining region (CDR) 3 of the T cell receptor (TCR)b chain in matched tumor lysates and peripheral blood mononuclear cells (PBMCs)
Sample: untreated control 5 (blood)
SAMN08795446 • SRS3090983 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Dneasy Blood and tissue kit from Qiagen was used to isolate DNA from whole tumor and PBMC lysates 2-step PCR was used to construct libraries for Illumina NextSeq platform
Experiment attributes:
GEO Accession: GSM3067660
Links:
Runs: 1 run, 942,826 spots, 282.8M bases, 129.1Mb
Run# of Spots# of BasesSizePublished
SRR6896920942,826282.8M129.1Mb2018-11-28

ID:
5292241

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