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SRX3782150: GSM3037771: WT1 non-stim d1; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 45.9M spots, 9.3G bases, 3.5Gb downloads

Submitted by: NCBI (GEO)
Study: The role of PKC-beta in B cell activation
show Abstracthide Abstract
PKCb-null (Prkcb-/-) mice are severely immunodeficient. Here we show that mice whose B cells lack PKCb fail to develop germinal centers and plasma cells, which in concert undermine affinity maturation and antibody production in response to immunization. Moreover, Prkcb-/- B cells fail to differentiate into plasma cells in response to viral infection. At a cellular level, we show that activated Prkcb-/- B cells exhibit defective antigen polarization and mTORC1 signaling. While the loss of antigen polarization impairs antigen presentation and restricts the potential of Prkcb-/- B cells to develop into GC B cells, altered mTORC1 signaling affects gene expression, metabolic reprogramming and mitochondrial remodeling which together overwhelmingly oppose commitment to plasma cell differentiation. Mechanistically, we show that PKCb-mediated metabolic reprogramming is required for sustained heme biosynthesis that is essential for effector fate decision in B cells. Taken together, our study reveals mechanistic insights into the function of PKCb as a key regulator of B-cell polarity and metabolic reprogramming that instructs B-cell fate. Overall design: 10 samples (2x conditions; WT 3x biological replicate; KO 2x biological replicate)
Sample: WT1 non-stim d1
SAMN08687151 • SRS3035545 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Ambion MagMAX-96 Total RNA Isolation kit was used and manufacturer's protocol was followed KAPA Stranded RNA-Seq Kit with RiboErase (HMR) from KAPA Biosystems
Experiment attributes:
GEO Accession: GSM3037771
Links:
Runs: 1 run, 45.9M spots, 9.3G bases, 3.5Gb
Run# of Spots# of BasesSizePublished
SRR682585845,856,5009.3G3.5Gb2018-06-05

ID:
5214224

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