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SRX3586848: GSM2936672: IFN-g rep1; Mus musculus; RNA-Seq
1 ILLUMINA (HiSeq X Ten) run: 23.4M spots, 7G bases, 2.6Gb downloads

Submitted by: NCBI (GEO)
Study: The Effect of TLR2 Activation on Transcriptome of IFN-induced Microglia
show Abstracthide Abstract
In murine glioma models, TLR2 is selectively upregulated in glioma-associated microglia. We found that TLR2 activation led to down-regulation of MHC-II in microglia. Therefore, we examined the effect of TLR2 activation on IFN-gamma-induced microglial transcriptome by in vitro culture of murine adult microglia. In the study, we confirmed that TLR2 activation led to Ciita shutdown and inhibition of MHC-II related genes, which also revealed the role of TLR2 in inducing APC disability and tumor immune escape. In addition, this work can be used to reveal the transcriptional characteristics of murine microglia during IFN-gamma and TLR2 activation. Overall design: Examination of transcriptional characteristics in murine adult microglia under TLR2 agonist and IFN-gamma treatments.
Sample: IFN-g rep1
SAMN08369986 • SRS2855398 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted using TRIZOL Reagent (Cat#15596-018,Life technologies, Carlsbad, CA, US) following the manufacturer's instructions and checked for a RIN number to inspect RNA integrity by an Agilent Bioanalyzer 2100. Qualified total RNA was further purified by RNAClean XP Kit (Cat A63987, Beckman Coulter,Inc.Kraemer Boulevard Brea, CA,USA) and RNase-Free DNase Set (Cat#79254, QIAGEN, GmBH, Germany). RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2936672
Links:
Runs: 1 run, 23.4M spots, 7G bases, 2.6Gb
Run# of Spots# of BasesSizePublished
SRR649786523,426,8057G2.6Gb2018-09-25

ID:
4972350

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