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SRX3367236: GSM2842881: A9813_CD8_STAT1 Transgenic_90' 10 ng/ml IFNg; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 12.4M spots, 3.4G bases, 1.4Gb downloads

Submitted by: NCBI (GEO)
Study: IL-7-dependent STAT1 activation limits homeostatic CD4+ T cell expansion
show Abstracthide Abstract
IL-7 regulates homeostatic mechanisms that maintain the overall size of the T cell pool throughout life. We show that, under steady-state conditions, IL-7 signaling is principally mediated by activation of signal transducers and activators of transcription 5 (STAT5). In contrast, under lymphopenic conditions, there is a modulation of STAT1 expression resulting in an IL-7-dependent STAT1 and STAT5 activation. Consequently, the IL-7-induced transcriptome is altered with enrichment of IFN-stimulated genes (ISGs). Moreover, STAT1 overexpression was associated with reduced survival in CD4+ T cells undergoing lymphopenia-induced proliferation (LIP). We propose a model in which T cells undergoing LIP upregulate STAT1 protein, "switching on" an alternate IL-7-dependent program. This mechanism could be a physiological process to regulate the expansion and size of the CD4+ T cell pool. During HIV infection, the virus could exploit this pathway, leading to the homeostatic dysregulation of the T cell pools observed in these patients. Overall design: Sorted naive CD4 T and CD8 T cells from WT or STAT1 transgenic mice were stimulated for 90 minutes with IL-7 or IFNg. Additonally CD4 T cells from WT or STAT1 trangenic or IL7Ra449F transgenic mice were stimulated for overnight with IL-7 or IFNg or IFNa4. Up to four biological replicates tested for each condition.
Sample: A9813_CD8_STAT1 Transgenic_90'' 10 ng/ml IFNg
SAMN07981600 • SRS2664884 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: The cells were then washed once with PBS before being resuspended in TRIzol (Invitrogen) and stored at −80°C. Illumina TrueSeq Stranded mRNA Library Prep kit from an input of 500 ng total RNA ("90-minute stimulation" samples) Illumina True-seq non-stranded mRNA ("overnight stimulation" samples)
Experiment attributes:
GEO Accession: GSM2842881
Links:
Runs: 1 run, 12.4M spots, 3.4G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR626090312,373,3893.4G1.4Gb2018-01-02

ID:
4701678

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