U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX313011: GSM1172734: pre2-2_NT; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 3.1M spots, 139.6M bases, 92.8Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Gene Expression Profile for knocking down Tet1 in pre-iPSCs culturing in Vc medium.
show Abstracthide Abstract
Tet1 is a hydroxylase known for its role in the conversion of 5-methylcytosines (5mC) to 5-hydroxymethylcytosines (5hmC) involved in the possible active demethylation process and gene expression regulation. As somatic cell reprogramming involves the re-activation of pluripotency genes and the silencing of somatic ones, it remains unclear the role of Tet1 in the reprogramming process. Here, we performed RNAseq for WT and knocking down Tet1 in two pre-iPSCs cell lines, pre2-2 and pre3. Overall design: Using two pre-iPSCs cell lines: pre2-2 and pre3, cultured by mES medium(+lif), transfected siCtrl/siTet1 siRNA or non-treatment, then, after 16h, the medium were replaced by mES(+lif) medium plus Vc(50ug/ml), total RNA was extracted after another 32h later for RNAseq.
Sample: pre2-2_NT
SAMN02211824 • SRS450565 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted by Trizol-based protocol. The libraries were prepared according to Illumina TruSeq® RNA sample preparation Kit.
Experiment attributes:
GEO Accession: GSM1172734
Links:
External link:
Runs: 1 run, 3.1M spots, 139.6M bases, 92.8Mb
Run# of Spots# of BasesSizePublished
SRR9169523,101,418139.6M92.8Mb2013-10-28

ID:
437625

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...