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SRX2924837: GSM2671350: cgas_tp3.4; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 9M spots, 753.2M bases, 310.7Mb downloads

Submitted by: NCBI (GEO)
Study: Innate immune sensing of cytosolic chromatin fragments through cGAS promotes senescence
show Abstracthide Abstract
Cellular senescence is triggered by various distinct stresses and characterized by a permanent cell cycle arrest. Senescent cells secrete a variety of inflammatory factors, collectively referred to as the senescence-associated secretory phenotype (SASP). The mechanism(s) underlying the regulation of the SASP remains incompletely understood. Here we define a role for innate DNA sensing in the regulation of senescence and the SASP. We find that cyclic GMP-AMP synthase (cGAS) recognizes cytosolic chromatin fragments (CCFs) in senescent cells. The activation of cGAS, in turn triggers the production of SASP factors via Stimulator of interferon genes (STING), thereby promoting paracrine senescence. We demonstrate that diverse stimuli of cellular senescence engage the cGAS-STING pathway in vitro and we show cGAS-dependent regulation of senescence upon irradiation and oncogene activation in vivo. Our findings provide insights into the mechanisms underlying cellular senescence by establishing the cGAS-STING pathway as a crucial regulator of senescence and the SASP. Overall design: Primary WT MEFs and cGAS KO MEFs were passaged for three weeks under 20% oxygen; their RNA was isolated at three different time points (day 33, 36, 42) and processed for RNA sequencing.
Sample: cgas_tp3.4
SAMN07249194 • SRS2290324 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA from bulk MEF populations was extracted using the RNeasy mini kit (Qiagen). 1.5 and 3 ug of total RNA was used for the preparation of the library using the TruSeq mRNA stranded LT (Illumina kit) TruSeq mRNA stranded LT (Illumina kit), with qubit quantification and QC with tapestation 4200 and Fragment analyzer.
Experiment attributes:
GEO Accession: GSM2671350
Links:
Runs: 1 run, 9M spots, 753.2M bases, 310.7Mb
Run# of Spots# of BasesSizePublished
SRR56911218,979,924753.2M310.7Mb2017-06-20

ID:
4178599

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