U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2896433: GSM2653788: BPH110BE; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 1500) run: 43.3M spots, 2.1G bases, 1,008.4Mb downloads

Submitted by: NCBI (GEO)
Study: Molecular pathogenesis of human prostate basal cell hyperplasia reveals a keratinocyte metaplasia
show Abstracthide Abstract
The incidence of basal cell hyperplasia (BCH) has been reported at 8-10%, but a molecular and cellular characterization has not been performed on this phenotype. Using freshly digested tissue from surgical specimens, we performed transcriptomic analysis of flow cytometry-purified basal epithelia from patients with and without a majority BCH phenotype. Gene set enrichment analysis revealed an increased expression of members of the epidermal differentiation complex, resembling the progression of other metaplastic diseases. Overall design: In order to generate a clean molecular profile of BCH, free of contaminating signal from leukocytes, stroma and luminal epithelia, we performed RNA sequencing on bulk-isolated basal epithelia from 3 patients with basal hyperplasia and 4 patients without BCH
Sample: BPH110BE
SAMN07206298 • SRS2263895 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 1500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA from 500K FACS-purified basal cells was extracted using RNEasy micro columns (Qiagen). RNA quality and quantity were measured by a Bioanalyzer and NanoDrop. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2653788
Links:
Runs: 1 run, 43.3M spots, 2.1G bases, 1,008.4Mb
Run# of Spots# of BasesSizePublished
SRR566010443,290,4892.1G1,008.4Mb2017-07-12

ID:
4147225

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...