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SRX2802564: GSM2616180: k4m2_nILC2_2; Homo sapiens; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 50.7M spots, 3.7G bases, 1.4Gb downloads

Submitted by: NCBI (GEO)
Study: Epigenome analysis reveals novel aspects of ILC2 activation and supports a pathogenic role in asthma
show Abstracthide Abstract
Recent studies have shown that group 2 innate lymphoid cells (ILC2s) can drive eosinophilic airway inflammation in mouse models of asthma. Moreover, elevated ILC2 counts and/or activity have been reported in asthmatics, together suggesting that ILC2s play an important role in asthma pathophysiology. However, many aspects of ILC2 biology are not fully understood, including the mechanisms underlying ILC2 activation, the tissue-specific functions of ILC2s during inflammation (e.g. lung versus draining lymph node) and what drives ILC2 plasticity. Importantly, it is unknown whether human (epi)genetic variation associated with asthma susceptibility and persistence can be coupled to ILC2s. We address these questions in our manuscript by studying the epigenome of murine ILC2s obtained from Gata3-reporter mice with eosinophilic airway inflammation as well as human ILC2s obtained from peripheral blood and activated in vitro. Overall design: biological replicate (n=2-4) RNA-Seq and ChIPmentation experiments including negative controls
Sample: k4m2_nILC2_2
SAMN06933066 • SRS2182856 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Murine ILC2s were obtained from Gata3-YFP/YFP mice with airway inflammation, human ILC2s from peripheral blood. Cells were FACS-sorted using specific antibodies (and YFP for murine cells) as described in detail in the manuscript. ChIPmentation: Nextera DNA library construction (as described in Schmidl et al. Nature Methods 2015); RNA-Seq: Smart-seq2library construction (as described in Picelli et al. Nature Methods (2013)
Experiment attributes:
GEO Accession: GSM2616180
Links:
Runs: 1 run, 50.7M spots, 3.7G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR553337350,657,7233.7G1.4Gb2018-03-14

ID:
4037292

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