GSM2589118: seeds harvested at stage 7.2, replica 2; Glycine max; RNA... - SRA

SRX2764639: GSM2589118: seeds harvested at stage 7.2, replica 2; Glycine max; RNA-Seq
9 ILLUMINA (Illumina HiSeq 2500) runs: 34.4M spots, 3.5G bases, 1.5Gb downloads

Submitted by: NCBI (GEO)

Study: Expression profiling of Glycine max seed maturation by high throughput sequencing

PRJNA384236 • SRP105213 • All experiments • All runs

show Abstracthide Abstract

A transcriptome analysis of soybean seeds harvested at different developing stages (between stage 7.1 and stage 9) was carried out to understand the molecular events occuring during the acquisition of seed longevity during maturation. Overall design: RNAseq from developing Glycine max seeds from stage 7.1 (mid-seedfilling) to final maturation

Sample: seeds harvested at stage 7.2, replica 2

SAMN06830780 • SRS2149100 • All experiments • All runs

Organism: Glycine max

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Total RNA was extracted from while seeds using the NucleoSpin® RNA Plant kit (Macherey-Nagel) cDNA libraries were generated using the TruSeq RNA sample preparation kit (Illumina, San Diego, CA, USA) to obtain single-end 100-bp long inserts

Experiment attributes:

GEO Accession: GSM2589118

Links:

NCBI link: NCBI Entrez (gds)

Runs: 9 runs, 34.4M spots, 3.5G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR5481122	4,000,000	404M	173.7Mb	2017-05-01
SRR5481123	4,000,000	404M	178.2Mb	2017-05-01
SRR5481124	3,378,954	341.3M	151.9Mb	2017-05-01
SRR5481125	4,000,000	404M	174Mb	2017-05-01
SRR5481126	4,000,000	404M	178.1Mb	2017-05-01
SRR5481127	3,494,158	352.9M	157.8Mb	2017-05-01
SRR5481128	4,000,000	404M	174.7Mb	2017-05-01
SRR5481129	4,000,000	404M	179.1Mb	2017-05-01
SRR5481130	3,507,896	354.3M	158.4Mb	2017-05-01

ID:: 3984252

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