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SRX2764509: GSM2589021: Ka; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 95.6M spots, 14.3G bases, 4.8Gb downloads

Submitted by: NCBI (GEO)
Study: Chromosomal instability promotes metastasis through a cytosolic DNA response
show Abstracthide Abstract
Chromosomal instability (CIN) is a hallmark of cancer, and it results from ongoing errors in chromosome segregation during mitosis. While CIN is a major driver of tumor evolution, its role in metastasis has not been established. Here we show that CIN promotes metastasis by sustaining a tumor-cell autonomous inflammatory response to cytosolic DNA. Errors in chromosome segregation create a preponderance of micronuclei whose envelopes frequently rupture exposing their DNA content to the cytosol. This leads to the activation of the cGAS-STING cytosolic DNA-sensing pathway and downstream noncanonical NF-kB signaling. Genetic suppression of CIN significantly delays metastasis in transplantable tumor models, whereas inducing chromosome segregation errors promotes cellular invasion and metastasis in a STING-dependent manner. In contrast to primary tumors, human and mouse metastases strongly select for CIN, in part, due to its ability to enrich for metastasis-initiating mesenchymal subpopulations, offering an opportunity to target chromosome segregation errors for therapeutic benefit. Overall design: To determine whether CIN is causally involved in metastasis, we devised a genetic approach to alter the rate of chromosome missegregation in transplantable tumor models of human TNBC (MDA-MB-231); cont: Control sample. Part of the CIN-medium group. Ka; Overexpression of Kif2a, which does not affect the number of chromosome segregation errors during anaphase and serves as an additional control. Part of the CIN-medium group. Kb; Overexpression of Kif2b, which leads to suppressed chromosome segregation errors during anaphase. Part of the CIN-low group. MK; Overexpression of MCAK which leads to suppressed chromosome segregation errors during anaphase. Part of the CIN-low group. MKH; Overexpression of dominant-negative form of MCAK, leading to increased number of chromosome segregation errors during anaphase. Part of the CIN-high group.
Sample: Ka
SAMN06830446 • SRS2148963 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Bulk RNA was extracted from cells using the QIAShredder (Qiagen – 79654) and the RNA extraction kit (Qiagen – 74106) and sequenced using HiSeq2500 or HiSeq4000 (Illumina Inc.).
Experiment attributes:
GEO Accession: GSM2589021
Links:
Runs: 1 run, 95.6M spots, 14.3G bases, 4.8Gb
Run# of Spots# of BasesSizePublished
SRR548095095,613,62014.3G4.8Gb2018-01-23

ID:
3984122

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