GSM2546369: SCL28-OX_replicate2; Arabidopsis thaliana; RNA-Seq - SRA

SRX2662877: GSM2546369: SCL28-OX_replicate2; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 28.6M spots, 5.8G bases, 3Gb downloads

Submitted by: NCBI (GEO)

Study: RNA-seq analysis of WT and SCL28-OX in the Arabidopsis thaliana root tip

PRJNA380206 • SRP102349 • All experiments • All runs

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Genome-wide transcriptome analysis to identify downstream genes that are transcriptionally regulated by SCL28 (At1g63100) Overall design: mRNA samples were prepared from the root tips of 5 d-old WT and SCL28-OX seedlings which were grown in a growth room at 22 ? under a constant light condition.

Sample: SCL28-OX_replicate2

SAMN06629486 • SRS2065024 • All experiments • All runs

Organism: Arabidopsis thaliana

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Total RNA samples were extracted from roots of 5 d-old seedlings using TRI REAGENT (Molecular Research Center, USA) according to the manufacturer’s instructions. The samples were cleaned up with RNeasy Plant Mini Kit (Qiagen, Germany) according to the manufacturer’s instructions. Libraries were prepared using Truseq Stranded mRNA Prep Kit

Experiment attributes:

GEO Accession: GSM2546369

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 28.6M spots, 5.8G bases, 3Gb

Run	# of Spots	# of Bases	Size	Published
SRR5367611	28,583,255	5.8G	3Gb	2017-05-01

ID:: 3847851

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