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SRX26553608: GSM8604237: ATAC-seq in sea star whole embryos at 66 hpf, replicate 1; Patiria miniata; ATAC-seq
1 ILLUMINA (Illumina HiSeq 4000) run: 30.7M spots, 3G bases, 1.2Gb downloads

External Id: GSM8604237_r1
Submitted by: Centro Andaluz de Biología del Desarrollo
Study: Developmental dynamics of sea urchin and sea star cis-regulation and the evolution of echinoderm genome organization - ATAC-seq
PRJNA1179351 • SRP541752 • All experiments • All runs
show Abstracthide Abstract
We identified conserved cis-regultaory elements based on their dynamic chromatin accessibility over the gastrula-larva stages Overall design: ATAC-seq assays in wild-type sea urchin whole embryos
Sample: ATAC-seq in sea star whole embryos at 66 hpf, replicate 1
SAMN44511542 • SRS23060150 • All experiments • All runs
Organism: Patiria miniata
Library:
Name: GSM8604237
Instrument: Illumina HiSeq 4000
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Wild type embryos were lysed Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-Seq) experiments were performed as described in Buenrostro et al., 2015. Curr. Protoc. Mol. Biol. 109, 21.29.1-9. doi:10.1002/0471142727.mb2129s109; Magri MS et al., 2020. Front Cell Dev Biol.24;7:372. doi: 10.3389/fcell.2019.00372; Magri MS et al., 2021. Methods Mol Biol. 2219:253-265. doi: 10.1007/978-1-0716-0974-3_16
Runs: 1 run, 30.7M spots, 3G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR3117030830,696,7323G1.2Gb2024-11-30

ID:
35875163

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