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SRX2628110: GSM2527223: Triple_Ribo_WT_3_input_3a; Mus musculus; RIP-Seq
1 ILLUMINA (NextSeq 500) run: 1.5M spots, 109.1M bases, 96.4Mb downloads

Submitted by: NCBI (GEO)
Study: Brown adipose tissue macrophages control tissue innervation and homeostatic energy expenditure
show Abstracthide Abstract
Tissue resident macrophages provide a systemic innate immune defense network and critically contribute to establishment and maintenance of tissue homeostasis. Here we used constitutive and inducible mutagenesis to delete the nuclear transcription regulator methyl-CpG binding protein 2 (MeCP2) in defined tissue macrophages. Animals lacking the Rett syndrome-associated gene in macrophages did not show signs of neurodevelopmental disorder, but surprisingly displayed altered body composition and spontaneous obesity. This phenotype involved neither hyper-phagia, primary hyper-insulinemia nor inflammation, but rather could be linked to impaired brown adipose tissue (BAT) function. Specifically, mutagenesis of a BAT-resident CX3CR1+ macrophage subpopulation compromised homeostatic, though not acute cold-induced thermogenesis. Mechanistically, steady state BAT malfunction of pre-obese mice harboring mutant macrophages was associated with decreased sympathetic innervation and lower local norepinephrine titers, resulting in reduced adipocyte expression of the thermogenic factors UCP1 and DIO2. Mutant macrophages were found to over-express PlexinA4, which might contribute to the phenotype by repulsion of Sema6A-expressing sympathetic axons. Collectively, we report a previously unappreciated homeostatic role of macrophages in the control of tissue innervation, disruption of which in BAT results in metabolic imbalance. Overall design: BAT macrophages taken from CX3CR1-cre, CX3CR1-CreER:tomato and CX3CR1-CreER:mecp2:ribo-tag for gene profiling in steady state
Sample: Triple_Ribo_WT_3_input_3a
SAMN06554783 • SRS2037980 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RIP-Seq
Source: TRANSCRIPTOMIC
Selection: other
Layout: SINGLE
Construction protocol: Enzymatic digestion and gradient seperation. Antibodies used throughout the research are: CD11b (clone M1/70), Ly6C (clone AL21), Ly6G (clone H129.19), f4/80 (clone BM8), CD64 (clone 90322), CD14 (clone Sa2-8), MerTK (polyclonal), MHCII (clone M5/114.15.2) 3' end mRNA libraries were prepared for sequencing using a method developed at Dr. Ido Amit's lab, Weizmann Institute of Science 3' RNA-seq for digital gene expression quantitation
Experiment attributes:
GEO Accession: GSM2527223
Links:
Runs: 1 run, 1.5M spots, 109.1M bases, 96.4Mb
Run# of Spots# of BasesSizePublished
SRR53290881,454,549109.1M96.4Mb2017-05-01

ID:
3805685

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