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SRX26250836: GSM8547807: WGBS of MRV sample 4; Mandarin fish ranavirus; Bisulfite-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 22.5M spots, 6.7G bases, 2Gb downloads

External Id: GSM8547807_r1
Submitted by: School of Marine Sciences, Sun Yat-sen University
Study: Whole-genome bisulfite sequencing of Mandarin fish ranavirus
show Abstracthide Abstract
To characterize the site-specific methylation landscape of the Mandarin fish ranavirus (MRV) genome, whole-genome bisulfite sequencing (WGBS) was conducted on an isolated MRV strain. Overall design: After inoculating Mandarin fish fry (MFF-1) cells with MRV (MG941005.3) at 27°C and 5% carbon dioxide in Dulbecco's modified Eagle medium (DMEM) for 3 days, the sample was collected after repeated freeze-thaw cycles. Virions were purified using a modified double sucrose gradient ultracentrifugation method. Genomic DNA was extracted from the purified virions using the FastPure Cell/Tissue DNA Isolation Mini Kit (Vazyme, China), and whole-genome bisulfite sequencing (WGBS) was subsequently performed.
Sample: WGBS of MRV sample 4
SAMN44007186 • SRS22790918 • All experiments • All runs
Library:
Name: GSM8547807
Instrument: Illumina NovaSeq 6000
Strategy: Bisulfite-Seq
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: The total DNA from the purified virions was extracted using the FastPure Cell/Tissue DNA Isolation Mini Kit following the manufacturer's protocol (Vazyme, China). Libraries were prepared using kit following to the manufacturer's protocol.
Runs: 1 run, 22.5M spots, 6.7G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR3085238822,491,6986.7G2Gb2024-10-04

ID:
35422700

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