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SRX2563490: GSM2491546: Flvcr Deleted Cell 44; Mus musculus; RNA-Seq
4 ILLUMINA (NextSeq 500) runs: 2.3M spots, 173.2M bases, 76.6Mb downloads

Submitted by: NCBI (GEO)
Study: Heme and GATA1 coordinately regulate erythroid differentiation [RNA-seq]
show Abstracthide Abstract
In mice lacking the heme exporter, FLVCR, differentiation fails at the CFU-E/proerythroblast stage from excessive heme and reactive oxygen species. We show that Flvcr1-deleted CFU-E/proerythroblasts have low GATA1 mRNA and GATA1-target gene mRNAs along with increased ribosomal protein mRNAs as a direct result of increased heme. Thus heme increases ribosomal protein transcription when globin production needs to be increased, and when heme is excessive, GATA1 is reduced allowing for normal termination of erythroid differentiation. This demonstrates that heme and GATA1 are co-master regulators of erythroid differentiation. Overall design: Total RNA obtained from erythroid cells of mice with Flvcr deleted compared to those of wild-type mice and wild-type mice treated with EPO.
Sample: Flvcr Deleted Cell 44
SAMN06334986 • SRS1980296 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: single-cell isolation protocol: Individual cells were isolated for mRNA sequencing using the C1 Single-Cell Auto Prep System (Fluidigm). imageing protocol: Each cell isolation chamber was imaged at 20X (Leica DMI 6000) with bright-field illumination and fluorescent channels. The Ter119 antibody was labeled with PCP-Cy5.5 and imaged using a 488/705 nm (excitation/emission) fluorescence filter cube. Cells were lysed, their mRNA reversely transcribed into cDNA, and the cDNA amplifed using the SMART-Seq whole-transcriptome amplification method on the C1 System according to the manufacturer's instructions. The cDNA libraries were collected from the C1 and prepared for sequencing using a Nextera XT DNA Sample preparation kit (Illumina).
Experiment attributes:
GEO Accession: GSM2491546
Links:
Runs: 4 runs, 2.3M spots, 173.2M bases, 76.6Mb
Run# of Spots# of BasesSizePublished
SRR5258209580,32943.9M19.4Mb2019-02-13
SRR5258210572,32843.3M19.1Mb2019-02-13
SRR5258211551,48041.7M18.6Mb2019-02-13
SRR5258212586,36344.3M19.5Mb2019-02-13

ID:
3705882

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