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SRX2480773: GSM2451685: HUH-AAV_RNA-Seq; Adeno-associated virus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 36.1M spots, 7.3G bases, 4.8Gb downloads

Submitted by: NCBI (GEO)
Study: Identification of liver-specific enhancer-promoter activity in the 3' UTR of the wild-type AAV2 genome
show Abstracthide Abstract
We describe and functionally characterize a previously unknown liver-specific enhancer-promoter element in the wild-type AAV2 (wtAAV2) genome lying between the cap stop codon and right-hand inverted terminal repeat (ITR). Remarkably, this element falls within the 163-nucleotide common insertion region of the AAV genome implicated in HCC oncogenesis, thereby providing a mechanistic explanation for the participation of AAV integration events in the development of HCC. Overall design: In vitro and in vivo assays demonstrate activity of the enhancer-promoter element in murine and human hepatocytes. An in vitro assessment of wtAAV2 infection demonstrates transcription from the negative strand of the AAV genome.
Sample: HUH-AAV_RNA-Seq
SAMN06213944 • SRS1912395 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were processed using an RNeasy kit (QIAGEN) to recover total RNA Illumina TruSeq Stranded mRNA LT Sample Prep Kit
Experiment attributes:
GEO Accession: GSM2451685
Links:
Runs: 1 run, 36.1M spots, 7.3G bases, 4.8Gb
Run# of Spots# of BasesSizePublished
SRR516361636,076,2627.3G4.8Gb2017-06-13

ID:
3595282

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