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SRX24696611: GSM8289845: miRNA AT4; Mus musculus; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 129.4M spots, 38.8G bases, 12.8Gb downloads

External Id: GSM8289845_r1
Submitted by: 上海交通大学
Study: Transcriptome Analysis Reveals Potential Protective Effects and Biomarkers of Pien Tze Huang on CCl4-induced Liver Cancer (miRNA)
show Abstracthide Abstract
Pien Tze Huang (PZH) is a traditional Chinese medicinal formula that has been extensively used in Asia for the treatment of liver diseases. We created two groups of liver cancer mouse models induced by carbon tetrachloride (CCl4): one group received treatment with PZH and the other did not receive any treatment. In the non-PZH treated group, we observed a significant increase in liver function indices including albumin (ALB), alanine aminotransferase (ALT), and aspartate aminotransferase (AST). Histological examination using hematoxylin and eosin (HE) staining revealed inflammation around the hepatic vein in the non-PZH treated group. Furthermore, Masson's trichrome staining demonstrated the presence of blue-stained collagen fibers around the hepatic vein in the non-PZH treated group. These findings suggest that PZH may have therapeutic effects on liver inflammation and cancer. To further explore the molecular mechanisms of PZH's action, we conducted mRNA, long non-coding RNA (lncRNA), circular RNA (circRNA), and microRNA (miRNA) sequencing to identify potential drug targets at the transcriptome level. We identified 478 differentially expressed protein-coding transcripts and 68 differentially expressed lncRNA transcripts. Our study provides insights into potential transcriptional therapeutic targets for the clinical use of PZH in treating liver diseases. Overall design: We construct two groups liver cancer mice model using CCl4, one group using PZH treatment, and the other did not receive any treatment. We also did a blank experiment with normal mice using water.In the 22nd week, we selected six mice from each group for miRNA sequencing.
Sample: miRNA AT4
SAMN41528071 • SRS21424136 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM8289845
Instrument: Illumina HiSeq 4000
Strategy: miRNA-Seq
Source: OTHER
Selection: size fractionation
Layout: PAIRED
Construction protocol: We extracted RNA from the mice liver tissues following the TRIzol reagent protocol provided by the manufacturer(Sigma). After the removal of ribosomal RNA, two sequencing libraries were generated: NEBNext RNA Library Prep Kit (from NEB, USA) was used for lncRNA, circRNA, and mRNA sequencing, while the small RNA libraries were constructed using VAHTS Small RNA Library Prep Kit for Illumina (Vazyme #NR801) following the manufacturer's recommendations, respectively. Following the manufacturer's instructions, subsequent sequencing was performed on the Illumina HiSeq 4000 platform for paired-end 150 bp sequencing of lncRNAs, circRNAs and mRNAs, and on the Illumina NovaSeq platform for paired-end 50 bp sequencing of miRNAs.
Runs: 1 run, 129.4M spots, 38.8G bases, 12.8Gb
Run# of Spots# of BasesSizePublished
SRR29176388129,399,56738.8G12.8Gb2024-05-26

ID:
33015689

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