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SRX24116046: GSM8181573: GD3+ Bgal- 2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 50M spots, 7.5G bases, 2.3Gb downloads

External Id: GSM8181573_r1
Submitted by: IRCAN - CNRS - INSERM
Study: Micro bulk sequencing on murine Bleomycin-induced fibrotic lungs sorted on SA-ß-Gal and GD3
show Abstracthide Abstract
Aging is marked by a progressive decline in physiological function, leading to an increased susceptibility to age-related diseases and cancer. On the cellular level, aging correlates with an accumulation of senescent cells, which play a dual role: they are critical for tissue homeostasis, yet their over-accumulation may drive pathological aging. We recently revealed that senescent cells could overexpress immunosuppressive molecules like the ganglioside GD3 at their cell surface to evade from immune surveillance and to facilitate their tolerogenicity. We investigate which cells expressed GD3 and whether this ganglioside could be considered as a new marker associated to senescence in a model of senescence associated disease: Bleomycin-induced lung fibrosis. Overall design: To characterize GD3 positive cells we induced lung fibrosis in young C57Bl6/J male mice by Bleomycin instillation. After 27 days, we collected the lungs, dissociated them and labeled them for GD3 as well as a know senescence marker: SA-ß-Gal. We then sorted the different fractions.
Sample: GD3+ Bgal- 2
SAMN40707706 • SRS20902803 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM8181573
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA extraction was performed using the Single Cell RNA Purification Kit (Norgen, ref#48200) following manufacturer's instructions. The library was prepared from 3 000pg of total RNA with SMART-Seq Stranded Mammalian Single Cell kit (Takara/Clontech, 634470) according to manufacturer's instructions.
Runs: 1 run, 50M spots, 7.5G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR2851510850,033,2577.5G2.3Gb2024-04-04

ID:
32425584

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