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SRX24100935: GSM8179489: Cetuximab-sensitive LIM1215-S – biol rep 3 [S48]; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 2000) run: 36.1M spots, 5.5G bases, 2.3Gb downloads

External Id: GSM8179489_r1
Submitted by: Institut de Recherche Expérimentale et Clinique, Université catholique de Louvain
Study: Gene expression changes associated with acquired resistance to anti-EGFR therapy (cetuximab) in colorectal cancer cells
show Abstracthide Abstract
Despite the implementation of personalized medicine, patients with metastatic CRC (mCRC) still have a dismal overall survival due to the frequent occurrence of acquired resistance mechanisms thereby leading to clinical relapse. Understanding molecular mechanisms that support acquired resistance to anti-EGFR targeted therapy in mCRC is therefore clinically relevant and key to improving patient outcomes. Here, we observe distinct metabolic changes between cetuximab-resistant CRC cell populations, with in particular an increased glycolytic activity in KRAS-mutant cetuximab-resistant LIM1215 but not in KRAS-amplified resistant DiFi cells. We show that cetuximab-resistant LIM1215 cells have the capacity to recycle glycolysis-derived lactate to sustain their growth capacity. This is associated with an upregulation of the lactate importer MCT1 at both transcript and protein levels. Pharmacological inhibition of MCT1, with AR-C155858, reduces the uptake and oxidation of lactate and impairs growth capacity in cetuximab-resistant LIM1215 cells. This study identifies MCT1-dependent lactate utilization as a clinically actionable, metabolic vulnerability to overcome KRAS-mutant-mediated acquired resistance to anti-EGFR therapy in CRC. Overall design: To study the metabolic adaptation of CRC cells upon acquired resistance to cetuximab treatment, we used two human colon cancer cell lines LIM1215 and DiFi, initially cetuximab-sensitive (denoted as -S), and for which populations with acquired resistance (-R1 and -R2) had been previously established upon chronic exposure for several months with the drug (Misale et al Nature 2012). While DiFi-R cells harbored EGFR gene copy number reduction and KRAS gene amplification, LIM1215-R cells were reported to display KRAS activating mutations. We then carried out gene expression profiling analysis using RNA-seq data obtained from cetuximab-resistant (-R1 and -R2) and cetuximab-sensitive (-S) DiFi and LIM1215 CRC cells.
Sample: Cetuximab-sensitive LIM1215-S – biol rep 3 [S48]
SAMN40655507 • SRS20889345 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM8179489
Instrument: NextSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from frozen cell pellets with the Monarch Total RNA Miniprep kit (New England Biolabs) by following manufacturer's protocol. Total RNA (300 ng/sample) was ribodepleted by using the NEBNEXT rRNA Depeletion kit (New England Biolabs) according to manufacturer's instructions. Ribodepleted RNA was then used for the library preparation with the NEBNext Ultra II Directional RNA library prep kit for Illumina (New England Biolabs) according to manufacturer's instructions. Libraries were paired-end sequenced (2*100 base pairs) on a NextSeq2000 device (Illumina), with a minimal depth of 10 million reads.
Runs: 1 run, 36.1M spots, 5.5G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR2849903736,093,0705.5G2.3Gb2024-07-03

ID:
32409216

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