GSM2417930: NC, 1; Homo sapiens; RNA-Seq - SRA

SRX2399057: GSM2417930: NC, 1; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 51.1M spots, 15.3G bases, 5.4Gb downloads

Submitted by: NCBI (GEO)

Study: RNA-seq in HT-29 colorectal cancer cells after F. nucleatum treatment

PRJNA356417 • SRP094643 • All experiments • All runs

show Abstracthide Abstract

To elucidate whether F. nucleatum plays a role in colorectal cancer tumorigenesis, RNA-seq analysis was performed to compare the gene expression profiles of F. nucleatum treated HT-29 cell line or not. Overall design: RNA-seq was performed in HT-29 colorectal cancer cells after F. nucleatum treatment

Sample: NC, 1

SAMN06113536 • SRS1839868 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 3000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: total RNA of HT-29 cells with different treatment was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM2417930

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 51.1M spots, 15.3G bases, 5.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR5080874	51,086,666	15.3G	5.4Gb	2017-07-28

ID:: 3488944

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