GSM2417580: PANC1 CTRL LC 1; Homo sapiens; RNA-Seq - SRA

SRX2398190: GSM2417580: PANC1 CTRL LC 1; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 34.8M spots, 1.7G bases, 666.4Mb downloads

Submitted by: NCBI (GEO)

Study: TCF7L1 knockdown in pancreatic cancer

PRJNA356377 • SRP094619 • All experiments • All runs

show Abstracthide Abstract

RNAi mediated depletion of TCF7L1 increases activity of a Wnt-based reporter and imparts more aggressive tumor phenotypes in vitro in pancreatic cancer cell lines that express TCF7L1. We sought to determine what changes in transcription ocurred after RNAi mediated knockdown of TCF7L1 in these cells by RNA-sequencing Overall design: 12 samples, 4 different conditions with 3 replicates each

Sample: PANC1 CTRL LC 1

SAMN06112632 • SRS1839129 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 3000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: RNA was extracted from cell pellets using Zymo Quick-RNA MiniPrep Kit Catalog: 11-327 Constructed using the KAPA stranded mRNA kit

Experiment attributes:

GEO Accession: GSM2417580

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 34.8M spots, 1.7G bases, 666.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR5079695	34,774,884	1.7G	666.4Mb	2017-06-20

ID:: 3488077

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity