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SRX2360456: GSM2396841: Col-0 +Pi; Arabidopsis thaliana; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 33.4M spots, 2.5G bases, 1,023.5Mb downloads

Submitted by: NCBI (GEO)
Study: Whole genome RNA-sequencing from root tips ofArabidopsis thalianalow-phosphate insensitive mutants under High and Low phosphate
show Abstracthide Abstract
Phosphate limitation constrains plant development in natural and agricultural systems. Under phosphate-limiting conditions plants activate genetic, biochemical and morphological modifications to cope with phosphate starvation. One of the morphological modifications that plants induce under phosphate limitation is the arrest of primary root growth and it is induced by the root tip contact with low phosphate media. The sensitive to proton rhizotoxicity (stop1) and aluminium activate malate transporter 1 (almt1) mutants of Arabidopsis thaliana continue primary root growth under in vitro Pi-limiting conditions, thus, to get insight into the molecular components that control primary root growth inhibition under low phosphate conditions we extracted and sequenced mRNA from the root tips (2-3 mm from the root apex) of wild-type plants (Col-0 accession) and low-phosphate-insensitive mutants almt1 and stop1 grown under low and high phosphate conditions 5 days after germination using an RNA-seq methodology. Overall design: Analysis of 9 different treatments, 3 different genotypes (Col-0,stop1,almt1), 4 different Phosphate treatments (High Pi, Low Pi, Low Pi -Fe, Low Pi +M), 1 biological replicate for treatment
Sample: Col-0 +Pi
SAMN06040779 • SRS1808915 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: For RNA-Seq total RNA was isolated using the TRIZOL reagent (Invitrogen) according to the manufacturer's instructions. For preparation of mRNA-Seq Libraries, total RNA was isolated from frozen root tip powder using the TRIzol® reagent (Invitrogen) according to the manufacturer’s instructions for isolation of total RNA from plant tissue. Non–strand-specific mRNA-seq libraries were generated from 5 μg of total RNA (Plant RNeasy kit) and prepared by using the TruSeq RNA Sample Prep kit (Illumina) according to the manufacturer’s instructions.
Experiment attributes:
GEO Accession: GSM2396841
Links:
Runs: 1 run, 33.4M spots, 2.5G bases, 1,023.5Mb
Run# of Spots# of BasesSizePublished
SRR503619233,370,0612.5G1,023.5Mb2017-08-22

ID:
3443659

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