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SRX23534699: GSM8063209: P7-P132 Acta2-CreERT2, R26R-LSL-EYFP; Mus musculus; RNA-Seq
2 ILLUMINA (Illumina NovaSeq 6000) runs: 252.9M spots, 29.8G bases, 8.4Gb downloads

External Id: GSM8063209_r1
Submitted by: Pulmonary & Sleep Medicine, Children's Hospital of Philadelphia
Study: Dynamic Hippo pathway activity underlies mesenchymal differentiation during lung alveolar morphogenesis
show Abstracthide Abstract
Alveologenesis, the final stage in lung development, substantially remodels the distal lung, expanding the alveolar surface area for efficient gas exchange. Secondary crest myofibroblasts (SCMF) exist transiently in the neonatal distal lung and are critical for alveologenesis. However, the pathways that regulate SCMF function, proliferation, and temporal identity remain poorly understood. To address this, we purified SCMFs from reporter mice, performed bulk RNA-sequencing, and found dynamic changes in Hippo-signaling components during alveologenesis. We deleted Hippo effectors, Yap/Taz, from Acta2-expressing SCMFs at the onset of alveologenesis, causing a significant arrest in alveolar development. Using scRNA-seq, we identified a distinct cluster of cells in mutant lungs with altered expression of marker genes associated with proximal mesenchymal cell types, airway smooth muscle (ASM), and alveolar duct myofibroblasts (DMF). Using lineage tracing, we show that neonatal Acta2-expressing SCMFs give rise to adult DMFs and that Yap/Taz mutants have an increase of persisting DMF-like cells in the alveolar ducts. Our findings identify aberrant differentiation of neonatal lung myofibroblasts and demonstrate that Yap/Taz are critical for maintaining lineage commitment. Overall design: 10Xv3 3'-biased scRNA-seq of cells from whole lung in mice, either a) with/without Acta2-CreERT2-driven YAP/TAZ deletion, or b) with Acta2-CreERT2-driven R26R-LSL-tdTomato lineage tracing and no other genetic manipulation.
Sample: P7-P132 Acta2-CreERT2, R26R-LSL-EYFP
SAMN39831113 • SRS20383496 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM8063209
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: cDNA
Layout: PAIRED
Construction protocol: Whole mouse lung dissociated into single-cell suspension before FACS. 10X genomics GEXv3 3'-scRNA-seq
Runs: 2 runs, 252.9M spots, 29.8G bases, 8.4Gb
Run# of Spots# of BasesSizePublished
SRR27872763126,642,66414.9G4.2Gb2024-02-10
SRR27872764126,218,26914.9G4.2Gb2024-02-10

ID:
31792040

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