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SRX23509738: GSM8060480: As4.1 cells treated with 10 μM H89, replicate 1; Mus musculus; ATAC-seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 58.3M spots, 17.5G bases, 6.7Gb downloads

External Id: GSM8060480_r1
Submitted by: Gomez Sequeira-Lopez, Pediatrics, University of Virginia
Study: Renin Regulatory Pathway Inhibition Epigenetically Silences *Ren1* (ATAC-Seq)
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Background: Renin-expressing cells are myoendocrine cells crucial for survival which detect changes in blood pressure and release renin to maintain homeostasis. Renin is regulated through several pathways including cAMP, p300/CBP, and BET proteins including Brd4. Binding to the cAMP-responsive element in the renin enhancer region amplifies renin transcription and relies on each of these factors for an appropriate response. The specific regulatory changes that occur following inhibition of these pathways remains understudied. Therefore, we aimed to evaluate chromatin changes and gene signatures that occur following inhibition of renin regulatory factors. Methods: We treated As4.1 cells (a tumoral cell line that constitutively expresses renin) with three inhibitors (H89: PKA inhibition; JQ1: Brd4 inhibition; A-485: p300/CBP inhibition) that target required factors for renin transcriptional regulation. We then performed ATAC-seq, scRNA-seq, and ChIP-seq for H3K27ac and P300 binding on biological replicates of treated and control As4.1 cells. Results: Ren1 expression is significantly, but transiently, reduced following each inhibitory treatment. Further, PKA inhibition leads to corresponding losses in H3K27ac and p300 binding at the locus. A restricted set of nine genes with overlapping dynamically accessible regions, differential gene expression, and H3K27ac and p300 binding were identified with roles across three primary renin regulatory paradigms. Conclusions: The data shows that renin expression is regulated through a switch from an active to poised state of epigenetic control, a shift toward a less differentiated cellular identity via the loss of enhancer elements, and the disruption of cAMP, baroreceptor, and Notch mediated renin regulatory pathways. Overall design: The regulation of renin was evaluated in As4.1 cells, a mouse cell line which expresses high levels of renin mRNA, by treating with either a control compound (DMSO) or separate inhibitors to either PKA, Brd4, or p300/CBP. The regulatory effects were evaluated using ATAC-seq, scRNA-seq, and ChIP-seq for H3K27ac and P300 binding.
Sample: As4.1 cells treated with 10 μM H89, replicate 1
SAMN39749626 • SRS20360416 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM8060480
Instrument: Illumina NovaSeq 6000
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: After 48 hours, 50,000 cells were collected, washed 3X with 5 mL dPBS (Dulbecco's Phosphate Buffered Saline, Gibco, UK), treated with Lysis Buffer, and resuspended. Tagmentation was performed using a Nextera DNA library Prep Kit (Illumina) according to the manufacturer's directions.
Runs: 1 run, 58.3M spots, 17.5G bases, 6.7Gb
Run# of Spots# of BasesSizePublished
SRR2784665758,325,99017.5G6.7Gb2024-08-26

ID:
31760460

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