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SRX23230933: GSM8018822: BRD4_FLAG_T2_2; Homo sapiens; OTHER
1 ILLUMINA (NextSeq 500) run: 17.3M spots, 5.2G bases, 1.6Gb downloads

External Id: GSM8018822_r1
Submitted by: Srivastava Lab, Cardiovascular Disease Institute, Gladstone Institutes (UCSF)
Study: A Genome-Wide CRISPR Screen Identifies BRD4 as a Regulator of Cardiomyocyte Differentiation [CUT&RUN]
show Abstracthide Abstract
We employed bulk Cut & Run sequencing to interrogate the consequence of BRD4 deletion in cardiac progenitor cells Overall design: Bulk accessibility analysis of hiPSC-derived cardiac progenitor cells, including a novel cell line w/ biallelically appended 3XFLAG epitope tag at the N-terminus of BRD4
Sample: BRD4_FLAG_T2_2
SAMN39458817 • SRS20153669 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM8018822
Instrument: NextSeq 500
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: Nuclei were isolated with Nuclear extraction buffer [20 mM HEPES-KOH, pH 7.9, 10 mM KCl, 0.5 mM Spermidine (Sigma #05292–1ml-F), 0.1% Triton X-100, 20% Glycerol and 1× protease and phosphatase inhibitor (Thermo Fisher #78442)]. To aid in nuclear capture, isolated nuclei were incubated with activated Concanavalin A beads (Bangs Laboratories #Bp531) for 15 minutes at room temperature followed by incubation with the desired primary antibody (1:100 dilution) overnight. Libraries were prepares using a commercially available CUT&RUN kit (Epicypher #14-1048).
Runs: 1 run, 17.3M spots, 5.2G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR2756175617,264,7855.2G1.6Gb2024-01-16

ID:
31391327

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