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SRX23165861: GSM8012896: cortex, dKO, biol rep 3; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 20.8M spots, 6.2G bases, 1.8Gb downloads

External Id: GSM8012896_r1
Submitted by: Akizu Lab, Pathology, Children's Hospital of Philadelphia
Study: IMPDH2 filaments protect from neurodegeneration in AMPD2 deficiency
show Abstracthide Abstract
Metabolic dysregulation is one of the most common causes of pediatric neurodegenerative disorders. However, how the disruption of ubiquitous and essential metabolic pathways predominantly affect neural tissue remains unclear. Here we use a mouse model of AMPD2 deficiency to study cellular and molecular mechanisms that lead to selective neuronal vulnerability to purine metabolism imbalance. We show that AMPD deficiency in mice primarily leads to hippocampal dentate gyrus degeneration despite causing a generalized reduction of brain GTP levels. Remarkably, we uncover that neurodegeneration resistant regions of the hippocampus accumulate micron sized filaments of IMPDH2, the rate limiting enzyme in GTP synthesis. In contrast, IMPDH2 filaments are barely detectable in the dentate gyrus, which show a progressively neuroinflammation and neurodegeneration. Furthermore, using a human AMPD2 neural cell culture model, we show that blocking IMPDH2 polymerization with a dominant negative IMPDH2 variant impairs AMPD2 deficient neural progenitor growth. Together, our findings suggest that IMPDH2 polymerization prevents detrimental GTP deprivation caused by AMPD2 deficiency, providing resistance to neurodegeneration. This data opens the possibility of exploring the involvement of IMPDH2 assembly as a therapeutic intervention for neurodegeneration. Overall design: To determine why the hippocampus is more vulnerable to GTP depletion and IMPDH2 assembly in dKO mice, we conducted a mRNA sequencing (RNAseq) analysis of the three brain regions exhibiting different degrees of neurodegeneration and IMPDH2 aggregation: the hippocampus showing neurodegeneration and IMPDH2 filaments, the cerebral cortex with apparently no neurodegeneration and low density of IMPDH2 filaments and the cerebellum with no degeneration or IMPDH2 filaments.
Sample: cortex, dKO, biol rep 3
SAMN39406587 • SRS20115454 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM8012896
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: On the day of RNA extraction, 50-100mg tissue from each sample was lysed in 1ml TRIzol (Invitrogen, #15596026) according to the manufacturer's recommendations. mRNA-seq libraries were generated at Novogene and sequenced on an Illumina NovaSeq 6000 platform with 2x150 PE configuration at an average of 15 million reads per sample.
Runs: 1 run, 20.8M spots, 6.2G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR2749464820,754,3626.2G1.8Gb2024-01-16

ID:
31292549

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