U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2311559: GSM2367173: C57BL6_Unstimulated; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 4.2M spots, 1.2G bases, 756.2Mb downloads

Submitted by: NCBI (GEO)
Study: Genome-wide effect of STING-mediated activation in T cells
show Abstracthide Abstract
Using wild type mice and mice deficient for STING, we compared genome-wide expression of RNA in response to STING activation with DMXAA Overall design: To look for the role of STING-mediated pathway in activation of T cells, we activated naïve T cells with DMXAA, a synthetic agonist of STING, together with activation of TCR. To define a STING-specific effect, STING-deficient animals were used as a control. We isolated naïve T cells from peripheral lymph nodes, negatively selected them using magnetic beads coated with antibodies, and activated cells for 4 hours in specified conditions. Next, we isolated RNA and made library using TruSeq kit (Illumina) for the library construction.One replica of each sample is provided
Sample: C57BL6_Unstimulated
SAMN05957531 • SRS1769499 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was prepared according to manufacture's instructions Library was prepared using Truseq pair-end Illumina kit. Briefly, 10-100 ng of total RNA was reconstituted in water, mixed with Ribosomal removal Buffer containing RNAClean XP beads, and depleted from rRNA. First strand was synthesized using RT, followed by a second strand synthesis, 3' ends were adenylated and ligated to the adaptors, followed by ligateion of the 5' adaptors; the library was purified and measured on DNA-concentration
Experiment attributes:
GEO Accession: GSM2367173
Links:
Runs: 1 run, 4.2M spots, 1.2G bases, 756.2Mb
Run# of Spots# of BasesSizePublished
SRR47346874,236,1481.2G756.2Mb2017-05-03

ID:
3376326

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...