U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX22617916: GSM7916077: Astrocytes, PGC-1a2 adenovirus infected, rep1; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 93.8M spots, 28.1G bases, 8.2Gb downloads

External Id: GSM7916077_r1
Submitted by: MCEP, Physiology and Pharmacology, Karolinska Institutet
Study: Sustained PGC-1a2 or PGC-1a3 expression induces astrocyte dysfunction and degeneration.
show Abstracthide Abstract
Peroxisome proliferator-activated receptor-gamma coactivator-1a (PGC-1a) transcriptional coactivators are key regulators of energy metabolism-related genes and are expressed in energy-demanding tissues. There are several PGC-1a variants with different biological functions in different tissues. The brain is one of the tissues where the role of PGC-1a isoforms remains less explored. Here, we used a toxin-based mouse model of Parkinson's disease (PD) and observed that the expression levels of variants PGC-1a2 and PGC-1a3 in the nigrostriatal pathway increases at the onset of dopaminergic cell degeneration. This increase occurs concomitant with an increase in glial fibrillary acidic protein levels. Since PGC-1a coactivators regulate cellular adaptive responses, we hypothesized that they could be involved in the modulation of astrogliosis induced by MPTP. Therefore, we analysed the transcriptome of astrocytes transduced with expression vectors encoding PGC-1a1 to 1a4 by massively parallel sequencing (RNA-seq) and identified the main cellular pathways controlled by these isoforms. Interestingly, in reactive astrocytes the inflammatory and antioxidant responses, adhesion, migration, and viability were altered by PGC-1a2 and PGC-1a3, showing that sustained expression of these isoforms induces astrocyte dysfunction and degeneration. This work highlights PGC-1a isoforms as modulators of astrocyte reactivity and potential therapeutic targets for the treatment of PD and other neurodegenerative disorders. Overall design: Comparative gene expression profiling analysis of RNA-seq data from primary mouse astrocytes infected with adenovirus endoding either PGC-1a isoforms or GFP as a control. Experiment contains three replicates for each condition
Sample: Astrocytes, PGC-1a2 adenovirus infected, rep1
SAMN38375159 • SRS19622818 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7916077
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were lysed and RNA was extracted using Trizol reagent Samples were purified by poly-A enrichment before library creation using Illumina TruSeq mRNA.
Runs: 1 run, 93.8M spots, 28.1G bases, 8.2Gb
Run# of Spots# of BasesSizePublished
SRR2692406393,792,83928.1G8.2Gb2023-11-27

ID:
30620805

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...