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SRX22099598: GSM7842683: WT_Her_1; Caenorhabditis elegans; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 34.9M spots, 7G bases, 2Gb downloads

External Id: GSM7842683_r1
Submitted by: Room 4203, Life Sciences, KAIST
Study: HLH-30/TFEB-regulated autophagy mediates sexual dimorphism in immunity in Caenorhabditis elegans
show Abstracthide Abstract
Sexual dimorphism affects diverse biological functions such as immune responses. However, mechanisms by which different sexes alter immunity remained largely unknown. By using Caenorhabditis elegans as a model, here we show that male animals exhibit enhanced immunity against various pathogenic bacteria via upregulating autophagy. We found that male C. elegans displayed upregulation of helix loop helix 30 (HLH-30)/transcription factor EB (TFEB), a transcription factor crucial for autophagy, which contributed to the enhanced anti-bacterial immunity. We showed that autophagy-related protein 2 (atg-2) that is upregulated by HLH-30/TFEB, mediated increased immunity in male animals. Thus, male C. elegans appear to be equipped with enhanced autophagy for increasing pathogen resistance, likely conferring prolonged mate search with less infection. Overall design: RNA-seq profiling of hlh-30(tm1978) mutant and WT males and hermaphrodites.
Sample: WT_Her_1
SAMN37831063 • SRS19164485 • All experiments • All runs
Library:
Name: GSM7842683
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNAs were extracted from prefertile adult to day 1 adult WT and hlh-30(tm1978) hermaphrodites and males, three times independently. Synchronized hermaphrodites were harvested using S-basal buffer. Males were picked and harvested using S-basal buffer every day. One set of total RNA of males was extracted from the samples collected for about 20 days. Total RNA was isolated using RNAiso plus following the manufacturer's instructions. cDNA library was prepared for paired-end RNA seq using Illumina NovaSeq 6000 platform.
Runs: 1 run, 34.9M spots, 7G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR2639369534,896,3037G2Gb2024-08-22

ID:
30031419

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