U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX22080085: GSM7837750: H60_ctrl_01; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 52.7M spots, 10.5G bases, 1.3Gb downloads

External Id: GSM7837750_r1
Submitted by: Center for Applied Bioinformatics, St Jude Children's Research Hospital
Study: Gene expression profile of Duocarmycin SA-treated human AML cell lines in vitro
show Abstracthide Abstract
Acute myeloid leukemia (AML) is a hematological malignancy that is characterized by the expansion of immature myeloid precursors and poor patient survival outcomes. As such there is a need for the evaluation of potential therapeutic candidates that can be used in combination with current treatment regimens to improve patient outcomes. In this study, we investigated the efficacy of DSA on AML cells in vitro and performed gene expression profile analysis of DSA-treated AML cells to identify genes that are regulated by DSA. Here we report DSA-induced differentially expressed genes and cellular pathways that are associated with the functional changes that are observed in DSA-treated AML cells. Our data provides, for the first time, DSA's unique gene signature and provides a mechanistic rationale for DSA-induced functional effects in AML cells. Overall design: To determine the gene expression profile of DSA-treated human AML cells, human AML cell lines (Molm 14 and HL-60) were cultured with two different concentrations of DSA for 36 hours. At 36 hours, cells were harvested and RNA was isolated from the cells using Qiagen's RNeasy mini kit. RNA concentration and quality was determined using the nanodrop. Gene sequencing was performed by the Hartwell Center for Biotechnology (St. Jude Children's Research Hospital) and gene expression profiling analysis by the Center for Applied Bioinformatics (St. Jude Children's Research Hospital) and Loma Linda University.
Sample: H60_ctrl_01
SAMN37799787 • SRS19146758 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7837750
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA extraction from cells and tumor tissues was performed using the RNeasy Mini Kit according to the manufacturer's instructions. RNA libraries were prepared for sequencing using standard Illumina protocols at the St. Jude Hartwell Center.
Runs: 1 run, 52.7M spots, 10.5G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR2637302152,733,82410.5G1.3Gb2024-05-01

ID:
30010833

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...