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SRX21946859: GSM7814557: Control_24h_Rec_rep3; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 12.7M spots, 1.3G bases, 621.9Mb downloads

External Id: GSM7814557_r1
Submitted by: University of Pennsylvania
Study: Short-term cold exposure induces persistent epigenomic memory in brown fat [RNA-Seq]
show Abstracthide Abstract
Deficiency of the epigenome modulator histone deacetylase 3 (HDAC3) in brown adipose tissue (BAT) impairs the ability of mice to survive in near-freezing temperatures. Here, we report that short-term exposure to mild cold temperature (STEMCT: 15°C for 24 hours) averted lethal hypothermia of mice lacking HDAC3 in BAT (HDAC3 BAT KO) exposed to 4°C. STEMCT restored the induction of the thermogenic coactivator PGC-1a along with UCP1 at 22°C, which is greatly impaired in HDAC3-deficient BAT, and deletion of either UCP1 or PGC-1a prevented the protective effect of STEMCT. Remarkably, the protection of HDAC3 BAT KO mice from cold intolerance following STEMCT lasted for up to 7 days. Transcriptional activator C/EBPb was induced by short-term cold exposure in mouse and human BAT and, uniquely, remained high for 7 days following STEMCT. Furthermore, analysis of C/EBPb activity revealed increased binding following STEMCT at genes, including the enhancers/promotors of UCP1 and PGC-1a. These results reveal the existence of a cold-adaptive epigenomic memory mediated by C/EBPb that is persistent and HDAC3-independent. Overall design: To evaluate if the effect of cold exposure is observed in the long term in control and HDAC3-deficent mice.
Sample: Control_24h_Rec_rep3
SAMN37610663 • SRS19025125 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7814557
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted from snap-frozen BAT using TRIzol reagent (Thermo Fisher Scientific, 15596026) followed by RNeasy Mini Kit (QIAGEN, 74104). Total RNA was isolated from mouse interscapular BAT of 10-12-week old mice. 250 ng of total RNA from biological replicates were DNase-treated prior to rRNA removal completed with a Ribo-Zero Magnetic kit (Illumina, MRZH11124) per standard protocol. The RNA libraries were prepared using the TruSeq RNA Sample Prep Kit v2 (Illumina, RS-122-2001) according to the standard Illumina protocol.
Runs: 1 run, 12.7M spots, 1.3G bases, 621.9Mb
Run# of Spots# of BasesSizePublished
SRR2623659512,691,1821.3G621.9Mb2024-07-03

ID:
29847544

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