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SRX2159679: GSM2309047: P4_R2; Mus musculus; RNA-Seq
6 ILLUMINA (Illumina HiSeq 2000) runs: 99.9M spots, 20G bases, 12.1Gb downloads

Submitted by: NCBI (GEO)
Study: RNA Sequencing of mouse Purkinje cells across postnatal development
show Abstracthide Abstract
We analyzed Purkinje cell transcriptome dynamics in the developing mouse cerebellum during the first three postnatal weeks, a key developmental period equivalent to the third trimester in human cerebellar development. Our study represents the first detailed analysis of developmental Purkinje cell transcriptomes and provides a valuable dataset for gene network analyses and biological questions on genes implicated in cerebellar and Purkinje cell development. Overall design: Laser capture microdissection was employed to obtain a highly enriched population of cerebellar Purkinje cells. Deep sequencing was performed on RNA isolated from 1000 Purkinje cells at five developmental timepoints (postnatal days P0, P4, P8, P14 and P21) in triplicate.
Sample: P4_R2
SAMN05762901 • SRS1688643 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Purkinje cells were laser microdissected, flash frozen on dry ice, and RNA was harvested using the RNeasy Micro Kit (Qiagen). cDNA libraries were prepared using the SMARTer Ultra Low RNA Kit for Illumina sequencing (Clontech), followe by NEBNext DNA Library Prep Master Mix Set for Illumina (New England Biolabs).
Experiment attributes:
GEO Accession: GSM2309047
Links:
Runs: 6 runs, 99.9M spots, 20G bases, 12.1Gb
Run# of Spots# of BasesSizePublished
SRR423841816,238,9753.2G2Gb2019-02-04
SRR423841915,747,2793.1G1.8Gb2019-02-04
SRR423842016,688,3043.3G2Gb2019-02-04
SRR423842116,955,3873.4G2.1Gb2019-02-04
SRR423842217,271,6183.5G2.1Gb2019-02-04
SRR423842317,021,2083.4G2.1Gb2019-02-04

ID:
3154459

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