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SRX21200689: GSM7669966: Control (miRNA); Homo sapiens; miRNA-Seq
4 ILLUMINA (Illumina HiSeq 1500) runs: 54.8M spots, 2.7G bases, 1.2Gb downloads

External Id: GSM7669966_r1
Submitted by: IPEK, LMU
Study: Inhibition of miR-497-5p improves keratinocyte function upon skin exposure to sulfur mustard
show Abstracthide Abstract
Sulfur mustard (SM) is a hazardous chemical warfare agent. Exposure to SM results in various pathologies including skin lesions and impaired wound healing. To date, there are no effective treatments available. Here we discover that the miRNA miR-497-5p is induced in epidermal cells by SM and mediates keratinocyte dysfunction. Transcriptome analysis using RNA-seq in normal human epidermal keratinocytes (NHEK) revealed that SM evoked differential expression of 1,896 mRNAs and 25 miRNAs with many of these RNAs known to be involved in keratinocyte function and wound healing. We demonstrated that keratinocyte differentiation and proliferation were efficiently regulated by miRNAs induced in skin cells after exposure to SM. The inhibition of miR-497-5p counteracted SM-induced premature differentiation and inhibition of proliferation in NHEK. In addition, we showed that microneedle-mediated transdermal application of lipid-nanoparticles containing miR-497-5p inhibitor improved the healing of human skin biopsies upon exposure to SM. Our findings expand the current understanding of SM-associated molecular toxicology in keratinocytes and highlight miR-497-5p as feasible clinical target for specific skin therapy in SM-exposed patients and beyond. Overall design: Normal human epidermal keratinocytes (NHEK) were left untreated or exposed to sulfur mustard (SM) at 10 µM and 30 µM or vehicle control (ethanol) (n = 4). After 24 hours of cultivation, mRNA and miRNA were isolated and subjected to RNA-seq analysis.
Sample: Control (miRNA)
SAMN36773286 • SRS18458999 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: GSM7669966
Instrument: Illumina HiSeq 1500
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Total RNA was extracted from 300 µl aliquots (0.5 x 106 cells) using the Maxwell® RSC miRNA Tissue Kit (Promega, Madison, WI, USA) on the Maxwell® RSC instrument according to the manufacturer's instructions. miRNA sequencing libraries were constructed using the QIAseq® miRNA Library Kit (Qiagen) starting with 100 ng of total RNA following the manufacturer's instructions.
Runs: 4 runs, 54.8M spots, 2.7G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR2546796214,786,168739.3M320.6Mb2024-07-27
SRR2546796310,754,255537.7M234Mb2024-07-27
SRR2546796414,966,629748.3M324.7Mb2024-07-27
SRR2546796514,298,844714.9M310.2Mb2024-07-27

ID:
28637011

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