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SRX21165861: GSM7663581: E7_embryo_female_WT_rep5; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 204.2M spots, 40.8G bases, 12.3Gb downloads

External Id: GSM7663581_r1
Submitted by: Neuroscience, University of North Carolina at Chapel Hill
Study: Fetal Sex Does Not Influence Rates of Gastrulation-Stage Alcohol-Induced Craniofacial Malformations in C57BL/6J Mice
show Abstracthide Abstract
Prenatal alcohol exposure during mouse gastrulation (embryonic day [E] 7 in mice, corresponding to ~3rd week of human pregnancy) impairs eye, facial, and cortical development, recapitulating birth defects characteristic of Fetal Alcohol Syndrome (FAS). However, the impact of sex on the prevalence or severity of craniofacial features associated with FAS is currently unknown. The current study administered either alcohol (2.9g/kg, two i.p. doses, four hours apart) or vehicle control to pregnant C57BL/6J females on E7 and assessed fetal morphology at E17. Whereas sex did not affect fetal size in vehicle-treated litters, alcohol-exposed females were smaller than both control females and alcohol-treated males. Alcohol exposure increased the incidence of eye defects to a similar degree in males and females. Together, this suggests that females might be more sensitive to the general developmental effects of alcohol, but not to the effects of alcohol specifically on the craniofacies. We also established a developmental transcriptional baseline via whole transcriptomic analysis of untreated E7 embryos, and found 214 differentially expressed genes in females vs. males, including those in pathways related to cilia and mitochondria structure and function, histone demethylase activity, and pluripotency. Overall design: RNA-seq between embryonic day 7.0 (E7.0) male and female embryos in C57BL/6J mice
Sample: E7_embryo_female_WT_rep5
SAMN36717706 • SRS18427647 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7663581
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was isolated from untreated male and female E7.0 embryos for whole transcriptome sequencing (n = 5 females, 7 males from 7 litters). No more than two embryos from each sex were used per litter. Libraries were prepared using the SMARTer Ultra Low Input RNA and Nextera XT DNA kits by the UNC High Throughput Sequencing Facility. Samples were pooled prior to sequencing and run paired-end (2x100) on a NovaSeq 6000 instrument using the S4 XP workflow.
Runs: 1 run, 204.2M spots, 40.8G bases, 12.3Gb
Run# of Spots# of BasesSizePublished
SRR25431594204,165,33540.8G12.3Gb2024-03-19

ID:
28601195

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