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SRX21130844: Liver single nuclei multiomics
1 ILLUMINA (Illumina NovaSeq 6000) run: 417.7M spots, 38G bases, 9.3Gb downloads

Design: Liver single nuclei RNAseq
Submitted by: UTHSCSA
Study: The Role of TCF7L2 in Hepatic Metabolic Zonation
show Abstracthide Abstract
Single nucleotide polymorphisms in the transcription factor 7-like 2 (TCF7L2) gene are associated with Type 2 Diabetes (T2D) and nonalcoholic fatty liver disease (NAFLD). The metabolic function of TCF7L2 in the liver remains to be fully elucidated, but we hypothesized that TCF7L2 contributes to NAFLD through regulation of zonal metabolic pathways. METHODS/STUDY POPULATION: Using single nuclei RNA sequencing, we examined Tcf7l2 expression in periportal (PP) hepatocytes around the portal triad and pericentral (PC) hepatocytes surrounding the central vein of the liver. To visualize TCF7L2 transcriptional activity we used a TCF reporter mice, which expresses an H2B-eGFP fusion protein downstream of the conserved TCF DNA binding site. We disrupted Tcf7l2 transcriptional activity in mouse liver by breeding mice with a floxed Tcf7l2 exon 11, which encodes part of the DNA binding domain (DBD), to albumin-Cre mice (Hep-TCF7L2IDBD).
Sample: 2645_C
SAMN36687917 • SRS18395638 • All experiments • All runs
Organism: Mus musculus
Library:
Name: Control RNA 2
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: PCR
Layout: PAIRED
Runs: 1 run, 417.7M spots, 38G bases, 9.3Gb
Run# of Spots# of BasesSizePublished
SRR25392716417,685,72038G9.3Gb2024-08-01

ID:
28565802

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