U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX2107190: GSM2301944: Lateral pulp_input_II; Gallus gallus; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 41.1M spots, 3.1G bases, 1.1Gb downloads

Submitted by: NCBI (GEO)
Study: Histone H3 Lysine 4 trimethylation (H3K4me3) ChIP-Seq to identify actively transcribing genes and their active promoter regions in the narrower and wider vanes of primary remiges, respectively
show Abstracthide Abstract
Purpose: One goal of this study is to identify actively transcribing genes in the mesenchyme (pulp) corresponding to the narrow (lateral) and wide (medial) vane of primary remiges. The other is to pinpoint the active promoter regions of these genes. Overall design: 15 primary remige follicles were collected, cut into the lateral and medial halves and shorted treated in 2x CMF to separate epithelium and mesenchyme. The mesenchymal cells were dissociated by 0.35% collagenase digestion. Then we conduct formaldehyde crosslinking, sonication, IP, reverse crosslinking and removal of protein/RNA. The library preparation and sequencing were done at USC epigenome center.
Sample: Lateral pulp_input_II
SAMN05727112 • SRS1666453 • All experiments • All runs
Organism: Gallus gallus
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Epithelium and mesenchyme were separated in 2xCMF. Mesenchymal cells were dissociated by 0.35% collagenase digestion. Cell lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions in USC epigenome center
Experiment attributes:
GEO Accession: GSM2301944
Links:
Runs: 1 run, 41.1M spots, 3.1G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR412521141,058,0073.1G1.1Gb2017-03-09

ID:
3101970

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...