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SRX20951795: GSM7577794: scRNA-Seq_TCRb+_Tcells_DTx3; Mus musculus; RNA-Seq
4 ILLUMINA (Illumina NovaSeq 6000) runs: 157.7M spots, 18.3G bases, 6Gb downloads

External Id: GSM7577794_r1
Submitted by: Roychoudhuri Laboratory, Department of Pathology, University of Cambridge
Study: Acquisition of suppressive function by CD4+ conventional T cells limits anti-tumor immunity driven by Treg depletion [scRNA-seq]
show Abstracthide Abstract
Regulatory T (Treg) cells are essential for immune homeostasis but inhibit immune rejection of cancer. Strategies to disrupt Treg-mediated cancer immunosuppression have been met with limited clinical success, but the underlying mechanisms for this failure are poorly understood. By modeling Treg-targeted immunotherapy in mice, we find that a subset of CD4+ Foxp3- conventional T (Tconv) cells with potent suppressive function undergoes activation and expansion upon depletion of Foxp3+ Treg cells and limits therapeutic efficacy. We noted that Foxp3- Tconv cells within tumors adopt a Treg-like transcriptional profile upon Treg depletion and acquire suppressive function. This is attributable to a Th2-like subset of CD4+ Tconv cells marked by expression of (C-C motif) receptor 8 (CCR8) and enriched in Treg-associated transcripts. CCR8+ Tconv cells are found in mouse and human tumors. Upon Treg depletion, CCR8+ Tconv cells undergo systemic and intratumoral activation and expansion, resulting in IL-10 dependent suppression of anti-tumor immunity. Consequently, conditional deletion of Il10 within T cells augments anti-tumor efficacy upon Treg-depletion in mice, and antibody blockade of IL-10 signaling synergizes with Treg depletion to overcome treatment resistance. These findings reveal a secondary layer of immunosuppression by Tconv cells released upon therapeutic Treg depletion and suggest that broader consideration of suppressive function within the T cell lineage is required for development of effective Treg-targeted therapies. Overall design: Syngeneic B16-F10 melanoma cells were subcutaneously implanted into Foxp3EGFP-DTR mice and ablated Treg cells through administration of DTx. T cells were isolated by FACS and subjected to scRNA-Seq analysis
Sample: scRNA-Seq_TCRb+_Tcells_DTx3
SAMN36359253 • SRS18228357 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7577794
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: cDNA
Layout: PAIRED
Construction protocol: Single-cell suspensions were purified by FACS-sorting of total TCR-b+ T cells from tumors of PBS- or DTx-treated Foxp3-EGFP-DTR animals. Cell suspensions were subjected to scRNA-Seq using the Chromium 10x scRNA-Seq platform Chromium 10x scRNA-Seq 5' library preparation with TCR enrichment was performed according to manufacturer's instructions Samples were individually barcoded according to Chromium 10x 5' kit instructions
Runs: 4 runs, 157.7M spots, 18.3G bases, 6Gb
Run# of Spots# of BasesSizePublished
SRR2520494350,000,0005.8G1.9Gb2024-01-11
SRR2520494450,000,0005.8G1.9Gb2024-01-11
SRR2520494550,000,0005.8G1.9Gb2024-01-11
SRR252049467,739,271897.8M352Mb2024-01-11

ID:
28385072

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