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SRX20579350: GSM7441409: G0_2; Mus musculus; RNA-Seq
1 DNBSEQ (DNBSEQ-G400) run: 22M spots, 6.6G bases, 3.9Gb downloads

External Id: GSM7441409_r1
Submitted by: The University of Texas MD Anderson Cancer Center
Study: Telomeric Chromosomal Instability Fosters Paracrine Mediated Cell Competition to Initiate Intestinal Cancer [bulk RNA-seq]
show Abstracthide Abstract
Telomere dysfunction drives chromosomal instability (CIN) during the transition from benign adenoma to malignant adenocarcinoma. While CIN provides a mutator mechanism for cancer- relevant genomic events, its role in shaping tumor biology during carcinogenesis is not well understood. Here, we explored the molecular and biological impact of telomere dysfunction and associated CIN in vivo in a faithful model of CRC. In vivo lineage tracing revealed that CIN increased the rate of neoplastic cell clonal expansion through accelerated differentiation of neighboring stem cells, resulting in increased number of adenomas and decreased survival in CIN-high Apcmin mice. Mechanistically, CIN represses EZH2 leading to upregulation of secreted Wnt antagonists, which resulted in a growth advantage to CIN-high neoplastic cells. Correspondingly, pharmacological activation of intrinsic WNT signaling enhanced intestinal stem cells fitness, leading to reduced neoplastic cell clonal expansion and adenoma burden. Thus, the CIN-EZH2-WNT axis enhances intestinal cancer initiation in the nascent tumor microenvironment, providing a preventive strategy for patients harboring germline APC mutations. Overall design: Comparative gene expression profiling analysis of RNA-seq data for CIN-low and CIN-high Apcmin colonoids.
Sample: G0_2
SAMN35571709 • SRS17881339 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7441409
Instrument: DNBSEQ-G400
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was isolated using the RNeasy Kit (Qiagen) Libraries were generated using BGI services.
Runs: 1 run, 22M spots, 6.6G bases, 3.9Gb
Run# of Spots# of BasesSizePublished
SRR2480710921,998,7936.6G3.9Gb2024-03-01

ID:
28007176

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