GSM7438661: K-NAA, CT3_rep1; Caenorhabditis elegans; RNA-Seq - SRA

SRX20565694: GSM7438661: K-NAA, CT3_rep1; Caenorhabditis elegans; RNA-Seq
1 DNBSEQ (DNBSEQ-G400) run: 12M spots, 3.6G bases, 1.7Gb downloads

External Id: GSM7438661_r1

Submitted by: Circadian clock lab, Tokyo Metropolitan Instituite of Medical Sciences

Study: Circadian RNA-seq dataset in nhr-23 knockldown strain.

PRJNA978523 • SRP440662 • All experiments • All runs

show Abstracthide Abstract

C. elegans were cultivated under temperature cycles for circadian entraiment. Then, we depleted NHR-23 using auxin-induced degron system, and sampled worms under constant(CC) condition every 2 h. Overall design: Circadian transcriptome anaysis of nhr-23 knockdown and control condition, at 12 h time points with 2 replicates.

Sample: K-NAA, CT3_rep1

SAMN35556760 • SRS17870218 • All experiments • All runs

Organism: Caenorhabditis elegans

Library:

Name: GSM7438661

Instrument: DNBSEQ-G400

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: RNA was extracted using TRIzol(ThermoFisher) and RNeasy mini kit(Qiagen) The library was constructed by BGI(China).

Runs: 1 run, 12M spots, 3.6G bases, 1.7Gb

Run	# of Spots	# of Bases	Size	Published
SRR24793291	12,022,499	3.6G	1.7Gb	2024-01-16

ID:: 27992694

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Sequence Read Archive

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