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SRX20440717: GSM7395747: Horse 5, non-immune, d5pi; Equus caballus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 20.5M spots, 1.7G bases, 670.8Mb downloads

External Id: GSM7395747_r1
Submitted by: Wagner, Population Medicine and Diagnostic Sciences, Cornell University
Study: Mucosal immune response against equine herpesvirus type 1
show Abstracthide Abstract
To investigate pre-existing mucosal immunity in equine herpesvirus type 1 (EHV-1) immune and non-immune horses during experimental viral challenge. RNAseq was performed on nasal mucosal swab samples from immune and non-immune horses from pre (d-2), early (d1pi and d3pi), mid (d8pi and d10pi), and late (d18pi) infection. Overall design: Comparative gene expression analysis of immune and non-immune horses throughout viral challenge.
Sample: Horse 5, non-immune, d5pi
SAMN35218007 • SRS17747126 • All experiments • All runs
Organism: Equus caballus
Library:
Name: GSM7395747
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was extracted using TRIzol LS reagent (Life Technologies Corporation, Carlsbad, CA, USA) following the manufacturer's protocol. RNA was processed using NEBNext Ultra II RNA Library Prep Kit (New England Biolabs, Ipswich, MA, USA) to create a cDNA library, which was quantified with a Qubit 2.0 (dsDNA HS Kit, Thermo Fisher, Waltham, MA, USA) and fragment size distribution was determined by Fragment Analyzer (Advanced Analytical, Orangeburg, NY, USA).
Runs: 1 run, 20.5M spots, 1.7G bases, 670.8Mb
Run# of Spots# of BasesSizePublished
SRR2466105520,501,2561.7G670.8Mb2024-05-08

ID:
27863872

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