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SRX20281057: GSM7317563: RCMV_dXCL1_3; Rattus norvegicus; Murid betaherpesvirus 8; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 20.2M spots, 1G bases, 337.1Mb downloads

External Id: GSM7317563_r1
Submitted by: RNA Biology and Posttranscriptional Regulation, Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine
Study: Rat cytomegalovirus efficiently replicates within dendritic cells and affects both surface marker and gene expression
show Abstracthide Abstract
Dendritic cells (DC) play a crucial role in generating and maintaining antiviral immunity. While DC are implicated in the antiviral defense by inducing T cell responses, they can also become infected by Cytomegalovirus (CMV). CMV is not only highly species-specific but also specialized in evading immune protection, and this specialization is in part due to characteristic genes encoded by a given virus. Here, we investigated whether RCMV can infect XCR1+ DC and if infection of DC alters the expression of cell surface markers and migration behavior. We demonstrate that wild-type RCMV and a _vxcl1 mutant virus infect splenic rat DC ex vivo and identify viral assembly compartments. Replication-competent RCMV reduced XCR1 and MHCII surface expression. Further, gene expression of infected DC was analyzed by single cell RNA-sequencing. RCMV infection reverted a state of DC activation that was induced by DC cultivation. On the functional level, we observed impaired chemotactic activity of infected XCR1+ DC compared to mock treated cells. We therefore speculate that as a result of RCMV infection, DC exhibit diminished XCR1 expression and are thereby inhibited from the lymphocyte crosstalk. Overall design: Dendritic cells were isolated from rat spleens, and RNA extracted immediately (input samples) or after 24 hours of treatment as indicated.
Sample: RCMV_dXCL1_3
SAMN35026852 • SRS17608082 • All experiments • All runs
Library:
Name: GSM7317563
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Cells were resuspended in Trizol LS (Thermo Fisher) and RNA isolated using the Zymo Clean and Concetrator Kit (Zymo). PolyA enriched RNA-sequencing library were constructed using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England Biolabs).
Runs: 1 run, 20.2M spots, 1G bases, 337.1Mb
Run# of Spots# of BasesSizePublished
SRR2449609520,206,6721G337.1Mb2023-05-15

ID:
27702205

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