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SRX2027197: GSM2282082: MDS_361; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 60.1M spots, 10.8G bases, 7.6Gb downloads

Submitted by: NCBI (GEO)
Study: Physiologic expression of Sf3b1K700E causes impaired erythropoieses, aberrant splicing, and sensitivity to pharmacologic spliceosome modulation
show Abstracthide Abstract
Over 80% of patients with the refractory anemia with ring sideroblasts subtype of myelodysplastic syndrome (MDS) have mutations in Splicing Factor 3B, Subunit 1 (SF3B1). We generated a conditional knock-in mouse model of the most common SF3B1 mutation, Sf3b1K700E. Sf3b1K700E mice develop macrocytic anemia due to a terminal erythroid maturation defect, erythroid dysplasia, and long-term hematopoietic stem cell (LT-HSC) expansion. Sf3b1K700E myeloid progenitors and SF3B1-mutant MDS patient samples demonstrate aberrant 3' splice-site selection associated with increased nonsense-mediated decay. Tet2 loss cooperates with Sf3b1K700E to cause a more severe erythroid and LT-HSC phenotype. Furthermore, the spliceosome modulator, E7017, selectively kills Sf3b1K700E-expressing cells. Thus, Sf3b1K700E expression reflects the phenotype of the mutation in MDS and may be a therapeutic target in MDS. Overall design: 15 samples, including 6 mouse and 9 human samples with varying SF3B1 status
Sample: MDS_361
SAMN05580180 • SRS1621533 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using the PrepEase RNA Spin Kit Human RNA libraries were prepared for sequencing using TrueSeq, while mouse RNA libraries were prepared using the NEBNext Ultra Library Preparation Kit
Experiment attributes:
GEO Accession: GSM2282082
Links:
Runs: 1 run, 60.1M spots, 10.8G bases, 7.6Gb
Run# of Spots# of BasesSizePublished
SRR403603660,076,22510.8G7.6Gb2016-08-19

ID:
2926419

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