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SRX20063659: GSM7220318: Male_low; Mus musculus; Bisulfite-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 429.7M spots, 129.8G bases, 42.9Gb downloads

External Id: GSM7220318_r1
Submitted by: Molecular Profiling Lab, Center for Cancer Research, MGH Cancer Center
Study: Prenatal exposure to benzo[a]pyrene depletes ovarian reserve and masculinizes embryonic ovarian germ cell transcriptome transgenerationally [Bisulfite-Seq]
show Abstracthide Abstract
People are exposed to polycyclic aromatic hydrocarbons, like benzo[a]pyrene (BaP), via inhalation of particulate matter air pollution and ingestion of grilled and smoked foods. Prenatal exposure to BaP destroys germ cells in ovaries, causing earlier onset of ovarian senescence post-natally. Developing testes are affected at higher doses than ovaries. However, it is not known if adverse effects are transmitted to subsequent generations. We orally dosed pregnant female mice (F0) with 0.033, 0.2, or 2 mg/kg-day BaP or vehicle from embryonic day (E) 6.5-11.5 (F1 offspring) or E6.5-15.5 (F2 and F3). Ovarian germ cell and follicle numbers were significantly decreased in F3 females at all doses of BaP; testicular germ cells were not affected. E13.5 germ cell RNA-sequencing revealed significantly increased expression of male-specific genes in female germ cells across generations and BaP doses. Our study demonstrated that F0 BaP exposure partially disrupted sexual identity of female germ cells transgenerationally. Overall design: Whole genome bisulfite sequencing of FACS-enriched mouse primordial germ cells with or without gestational exposure to banzo[a]pyrene: Repeated Experiment (F3 primordial germ cells)
Sample: Male_low
SAMN34314223 • SRS17401538 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7220318
Instrument: Illumina NovaSeq 6000
Strategy: Bisulfite-Seq
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Genomic DNA was isolated from FACS-enriched mouse primordial germ cells (20,000 - 30,000 cells) using AllPrep Micro Kit (QIAGEN) and subjected to bisulfite conversion using EZ DNA Methylation-Gold Kit (Zymo Research) following manurfacturers' instructions. Illumina libraries were synthesized using Accel-NGS Methyl-seq DNA Library Kit (Swift Biosciences) following manufacturer's instructions.
Runs: 1 run, 429.7M spots, 129.8G bases, 42.9Gb
Run# of Spots# of BasesSizePublished
SRR24267858429,724,174129.8G42.9Gb2023-06-07

ID:
27465396

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